Len_g55741

Description : component *(eS24) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0000886 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000886_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g55741
Cluster	HCCA: Cluster_138

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00056p00221450	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AT3G04920	No alias	Ribosomal protein S24e family protein	0.03	OrthoFinder output from all 47 species
AT5G28060	No alias	Ribosomal protein S24e family protein	0.04	OrthoFinder output from all 47 species
Adi_g089829	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g17637	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0007.g011184	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0103.g044621	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g78636	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.04G017300.1	Ceric.04G017300	component *(eS24) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ceric.39G012600.1	Ceric.39G012600	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000361.64	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Cre10.g456200	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g25341	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Gb_38272	No alias	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
LOC_Os02g13530.1	LOC_Os02g13530	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
MA_119841g0010	No alias	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp1g10680.1	No alias	component RPS24 of SSU proteome	0.05	OrthoFinder output from all 47 species
Pp3c12_10760V3.1	Pp3c12_10760	Ribosomal protein S24e family protein	0.03	OrthoFinder output from all 47 species
Pp3c13_22220V3.1	Pp3c13_22220	Ribosomal protein S24e family protein	0.02	OrthoFinder output from all 47 species
Pp3c3_19700V3.1	Pp3c3_19700	Ribosomal protein S24e family protein	0.01	OrthoFinder output from all 47 species
Ppi_g28244	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g55932	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g12713	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g12714	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g45993	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g50017	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Smo271584	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Solyc01g097870.3.1	Solyc01g097870	component RPS24 of SSU proteome	0.04	OrthoFinder output from all 47 species
Solyc06g084230.3.1	Solyc06g084230	component RPS24 of SSU proteome	0.04	OrthoFinder output from all 47 species
Spa_g19361	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Tin_g29759	No alias	component *(eS24) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Zm00001e014422_P002	Zm00001e014422	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species
Zm00001e028203_P001	Zm00001e028203	component RPS24 of SSU proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0004590	orotidine-5'-phosphate decarboxylase activity	IEP	HCCA
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	HCCA
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0009112	nucleobase metabolic process	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0046112	nucleobase biosynthetic process	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001976	Ribosomal_S24e	51	129

External Links

No external refs found!

Len_g55741

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation