Len_g54645


Description : component *(uS17) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001674 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001674_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g54645

Target Alias Description ECC score Gene Family Method Actions
AT3G48930 EMB1080 Nucleic acid-binding, OB-fold-like protein 0.03 OrthoFinder output from all 47 species
AT4G30800 No alias Nucleic acid-binding, OB-fold-like protein 0.03 OrthoFinder output from all 47 species
AT5G23740 RPS11-BETA ribosomal protein S11-beta 0.04 OrthoFinder output from all 47 species
Aob_g06312 EMB1080 component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aop_g00917 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0268.g061080 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000551.22 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Cre12.g514500 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Dac_g01215 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g05219 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01035927001 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
MA_19350g0010 EMB1080 component RPS11 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp4g23360.1 EMB1080 component RPS11 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp6g10500.1 EMB1080 component RPS11 of SSU proteome 0.03 OrthoFinder output from all 47 species
Msp_g27112 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Nbi_g01705 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c1_27980V3.1 EMB1080, Pp3c1_27980 Nucleic acid-binding, OB-fold-like protein 0.01 OrthoFinder output from all 47 species
Pp3c2_13690V3.1 EMB1080, Pp3c2_13690 Nucleic acid-binding, OB-fold-like protein 0.01 OrthoFinder output from all 47 species
Pp3s116_30V3.1 EMB1080, Pp3s116_30 Nucleic acid-binding, OB-fold-like protein 0.01 OrthoFinder output from all 47 species
Sam_g04222 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Smo268639 EMB1080 Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Solyc06g073790.3.1 Solyc06g073790 component RPS11 of SSU proteome 0.02 OrthoFinder output from all 47 species
Solyc06g073800.3.1 Solyc06g073800 component RPS11 of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc12g042080.2.1 Solyc12g042080 component RPS11 of SSU proteome 0.03 OrthoFinder output from all 47 species
Spa_g08091 No alias component *(uS17) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004506 squalene monooxygenase activity IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006384 transcription initiation at RNA polymerase III promoter IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008373 sialyltransferase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0042579 microbody IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
InterPro domains Description Start Stop
IPR000266 Ribosomal_S17/S11 104 172
IPR032440 Ribosomal_S11_N 34 102
No external refs found!