Len_g49533


Description : not classified & original description: none


Gene families : OG0003321 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003321_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g49533

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00086p00132870 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AT3G47890 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.07 OrthoFinder output from all 47 species
AT3G47910 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.07 OrthoFinder output from all 47 species
Ala_g04590 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g06801 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18753 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22460 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene09608.t1 Aspi01Gene09608 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene09608.t2 Aspi01Gene09608 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene09610.t1 Aspi01Gene09610 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene43347.t1 Aspi01Gene43347 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Azfi_s0327.g065237 No alias not classified & original description: CDS=1-5397 0.04 OrthoFinder output from all 47 species
Ceric.1Z194000.1 Ceric.1Z194000 not classified & original description: pacid=50618972... 0.06 OrthoFinder output from all 47 species
Cre12.g508250 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g28933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04153 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07008 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g16619 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01008079001 No alias No description available 0.07 OrthoFinder output from all 47 species
LOC_Os03g06950.1 LOC_Os03g06950 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Lfl_g12618 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_46922g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g13542 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g05015 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g44266 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008734 No alias not classified & original description: CDS=269-5383 0.03 OrthoFinder output from all 47 species
Solyc06g071120.3.1 Solyc06g071120 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g25851 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g02198 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e039017_P003 Zm00001e039017 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR006866 DUF627_N 93 199
IPR006865 DUF629 359 931
IPR001394 Peptidase_C19_UCH 1430 1751
No external refs found!