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  5. Len_g49218

Len_g49218


Description : not classified & original description: none


Gene families : OG0006147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006147_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g49218

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00150780 ATX1, SDG27,... Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g014225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21981 SDG30, ATX2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29506 ATX4, SDG16 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g27002 ATX4, SDG16 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_26322 SET29, SDG29, ATX5 Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os09g38440.1 SDG30, ATX2,... Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10436998g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp1g26800.1 SDG30, ATX2 Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Ppi_g29454 ATX1, SDG27 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo424372 No alias Histone-lysine N-methyltransferase ATX3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 286 330
No external refs found!