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  5. Len_g49005

Len_g49005


Description : pectin acetylesterase *(PAE) & original description: none


Gene families : OG0000637 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000637_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g49005

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00148030 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectin... 0.02 OrthoFinder output from all 47 species
Dcu_g02921 No alias pectin acetylesterase *(PAE) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031342001 No alias Cell wall.pectin.modification and degradation.pectin... 0.02 OrthoFinder output from all 47 species
LOC_Os07g44070.1 LOC_Os07g44070 pectin acetylesterase 0.02 OrthoFinder output from all 47 species
Nbi_g12003 No alias pectin acetylesterase *(PAE) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0136.g022387 No alias pectin acetylesterase *(PAE) & original description: CDS=96-1526 0.03 OrthoFinder output from all 47 species
Sam_g52027 No alias pectin acetylesterase *(PAE) & original description: none 0.03 OrthoFinder output from all 47 species
Smo271371 No alias Cell wall.pectin.modification and degradation.pectin... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR004963 PAE/NOTUM 78 429
No external refs found!