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  5. Len_g48260

Len_g48260


Description : cofactor of plastid-encoded RNA polymerase *(TAC17) & original description: none


Gene families : OG0001348 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001348_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g48260
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00183310 PTAC17,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 OrthoFinder output from all 47 species
Cba_g19694 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.04 OrthoFinder output from all 47 species
Dac_g05651 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04708 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Dde_g11205 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Ehy_g22577 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01017471001 PTAC17 RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
Gb_13256 PTAC17 TAC17 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
LOC_Os02g55630.1 PTAC17, LOC_Os02g55630 TAC17 cofactor of plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species
Ore_g26422 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g13366 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014804 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0495.g027428 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.04 OrthoFinder output from all 47 species
Sam_g23567 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Sam_g27089 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo405512 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003495 CobW/HypB/UreG_dom 107 292
IPR011629 CobW-like_C 374 467
No external refs found!