Len_g47387


Description : not classified & original description: none


Gene families : OG0000402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g47387

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00075p00159900 evm_27.TU.AmTr_v1... Increased DNA methylation 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00075p00162770 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AMTR_s00146p00080830 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
Aev_g08216 No alias component *(IDM1) of ROS1-recruitment complex & original... 0.02 OrthoFinder output from all 47 species
Aev_g13062 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20182 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20272 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13559 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19628.t1 Aspi01Gene19628 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25981.t1 Aspi01Gene25981 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene53152.t1 Aspi01Gene53152 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16245 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g31776 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.04G075300.1 Ceric.04G075300 not classified & original description: pacid=50631416... 0.04 OrthoFinder output from all 47 species
Ceric.35G031200.1 Ceric.35G031200 not classified & original description: pacid=50581090... 0.03 OrthoFinder output from all 47 species
Dcu_g09002 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g16965 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g10038 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01014219001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder output from all 47 species
GSVIVT01017972001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder output from all 47 species
LOC_Os03g53630.1 LOC_Os03g53630 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os07g07690.1 LOC_Os07g07690 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Lfl_g06765 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g12951 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_139275g0010 No alias PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
MA_14500g0010 No alias component IDM1 of ROS1-recruitment complex. PHD finger... 0.03 OrthoFinder output from all 47 species
MA_3931g0010 No alias PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Mp6g21090.2 No alias PHD finger transcription factor 0.04 OrthoFinder output from all 47 species
Msp_g13348 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g13351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13767 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18818 No alias component *(IDM1) of ROS1-recruitment complex & original... 0.06 OrthoFinder output from all 47 species
Pir_g01695 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g06867 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g35938 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0245.g026694 No alias not classified & original description: CDS=519-4760 0.03 OrthoFinder output from all 47 species
Sam_g15944 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo80470 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
Solyc03g071550.3.1 Solyc03g071550 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Solyc06g082040.2.1 Solyc06g082040 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc09g065340.3.1 Solyc09g065340 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc09g076010.3.1 Solyc09g076010 PHD finger transcription factor 0.05 OrthoFinder output from all 47 species
Spa_g04858 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50990 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g20194 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g21039 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e001315_P001 Zm00001e001315 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e005667_P001 Zm00001e005667 PHD finger transcription factor 0.05 OrthoFinder output from all 47 species
Zm00001e032904_P002 Zm00001e032904 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e042012_P001 Zm00001e042012 component IDM1 of ROS1-recruitment complex. PHD finger... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 526 565
IPR032308 TDBD 449 500
No external refs found!