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  5. Len_g44742

Len_g44742


Description : regulatory factor *(RIQ) of thylakoid grana stacking & original description: none


Gene families : OG0004759 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004759_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g44742
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00154p00066950 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT5G08050 No alias Protein of unknown function (DUF1118) 0.1 OrthoFinder output from all 47 species
Adi_g021665 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.07 OrthoFinder output from all 47 species
Adi_g046840 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.11 OrthoFinder output from all 47 species
Adi_g110043 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.04 OrthoFinder output from all 47 species
Aev_g00608 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.07 OrthoFinder output from all 47 species
Aev_g10172 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.07 OrthoFinder output from all 47 species
Ala_g00963 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.07 OrthoFinder output from all 47 species
Als_g04124 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.07 OrthoFinder output from all 47 species
Aob_g09320 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.06 OrthoFinder output from all 47 species
Aop_g09516 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.08 OrthoFinder output from all 47 species
Cba_g04313 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.09 OrthoFinder output from all 47 species
Ceric.34G020000.1 Ceric.34G020000 regulatory factor *(RIQ) of thylakoid grana stacking &... 0.08 OrthoFinder output from all 47 species
Dac_g00528 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.08 OrthoFinder output from all 47 species
Dcu_g47527 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.09 OrthoFinder output from all 47 species
Dde_g01981 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.09 OrthoFinder output from all 47 species
Ehy_g02092 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.06 OrthoFinder output from all 47 species
GSVIVT01008106001 No alias No description available 0.06 OrthoFinder output from all 47 species
Gb_03565 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
LOC_Os12g38640.1 LOC_Os12g38640 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Len_g11447 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.04 OrthoFinder output from all 47 species
Lfl_g03718 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.03 OrthoFinder output from all 47 species
Mp1g29140.1 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Msp_g08411 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.04 OrthoFinder output from all 47 species
Nbi_g08483 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.11 OrthoFinder output from all 47 species
Ore_g09667 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.05 OrthoFinder output from all 47 species
Pir_g59758 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.06 OrthoFinder output from all 47 species
Pnu_g10046 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.08 OrthoFinder output from all 47 species
Ppi_g30016 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0091.g018867 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.04 OrthoFinder output from all 47 species
Sam_g23850 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.08 OrthoFinder output from all 47 species
Smo415599 No alias No description available 0.02 OrthoFinder output from all 47 species
Spa_g03718 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.05 OrthoFinder output from all 47 species
Spa_g04667 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.06 OrthoFinder output from all 47 species
Tin_g15216 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.1 OrthoFinder output from all 47 species
Zm00001e002989_P001 Zm00001e002989 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008883 glutamyl-tRNA reductase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010206 photosystem II repair IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030091 protein repair IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR009500 DUF1118 122 232
No external refs found!