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  5. Len_g41520

Len_g41520 (GTE4)


Aliases : GTE4

Description : transcriptional co-activator *(BET/GTE) & original description: none


Gene families : OG0000177 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000177_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g41520

Target Alias Description ECC score Gene Family Method Actions
Adi_g050232 BET9, ATBET9 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Adi_g057352 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Adi_g076959 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g112451 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63818 GTE6 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Aop_g06213 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010983 GTE3 transcriptional co-activator *(BET/GTE) & original... 0.05 OrthoFinder output from all 47 species
Ceric.28G020800.1 GTE4, Ceric.28G020800 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Cre08.g367300 BET9, ATBET9 Transcription factor GTE3, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g02788 GTE1, GTE01, IMB1 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Dde_g22842 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g31224 GTE4 mTERF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g32331 GTE8 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01020670001 GTE4 Transcription factor GTE4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os04g53170.1 GTE7, LOC_Os04g53170 transcriptional co-activator (BET/GTE) 0.01 OrthoFinder output from all 47 species
LOC_Os08g03360.1 NPX1, LOC_Os08g03360 Transcription factor GTE9 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10435152g0020 GTE8 transcriptional co-activator (BET/GTE) 0.03 OrthoFinder output from all 47 species
Ore_g16068 GTE6 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Pir_g02552 GTE4 transcriptional co-activator *(BET/GTE) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g19060 BET9, ATBET9 transcriptional co-activator *(BET/GTE) & original... 0.02 OrthoFinder output from all 47 species
Sam_g12553 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g091660.3.1 GTE7, Solyc02g091660 transcriptional co-activator (BET/GTE) 0.01 OrthoFinder output from all 47 species
Zm00001e024861_P001 GTE4, Zm00001e024861 transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species
Zm00001e029260_P001 BET9, ATBET9,... transcriptional co-activator (BET/GTE) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006528 asparagine metabolic process IEP HCCA
BP GO:0006529 asparagine biosynthetic process IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008837 diaminopimelate epimerase activity IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
MF GO:0047661 amino-acid racemase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001487 Bromodomain 212 295
IPR027353 NET_dom 359 417
No external refs found!