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  5. Len_g36646

Len_g36646


Description : not classified & original description: none


Gene families : OG0005062 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005062_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g36646

Target Alias Description ECC score Gene Family Method Actions
AT1G77030 No alias hydrolases, acting on acid anhydrides, in... 0.03 OrthoFinder output from all 47 species
Als_g10873 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05013 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009755 No alias not classified & original description: CDS=181-2391 0.03 OrthoFinder output from all 47 species
Cre12.g513701 No alias DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Dcu_g01892 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g06026 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10445 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009983001 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.03 OrthoFinder output from all 47 species
Lfl_g04227 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_104828g0010 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.03 OrthoFinder output from all 47 species
Pir_g02302 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g09876 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15446 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo438217 No alias Putative DEAD-box ATP-dependent RNA helicase 29... 0.02 OrthoFinder output from all 47 species
Solyc10g009070.3.1 Solyc10g009070 Putative DEAD-box ATP-dependent RNA helicase 29... 0.02 OrthoFinder output from all 47 species
Zm00001e022381_P001 Zm00001e022381 DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0061666 UFM1 ligase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0071568 UFM1 transferase activity IEP HCCA
BP GO:0071569 protein ufmylation IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 85 249
IPR001650 Helicase_C 289 399
No external refs found!