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  5. Len_g36163

Len_g36163


Description : not classified & original description: none


Gene families : OG0000085 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000085_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g36163

Target Alias Description ECC score Gene Family Method Actions
Adi_g066290 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07001 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g15010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54590 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013844 No alias not classified & original description: CDS=158-3016 0.03 OrthoFinder output from all 47 species
Ceric.28G013700.1 Ceric.28G013700 not classified & original description: pacid=50569930... 0.03 OrthoFinder output from all 47 species
Dcu_g06212 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g10391 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021983001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01030266001 No alias B2 protein OS=Daucus carota 0.02 OrthoFinder output from all 47 species
Gb_00306 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_16287 No alias B2 protein OS=Daucus carota (sp|p37707|b2_dauca : 93.2) 0.02 OrthoFinder output from all 47 species
Lfl_g02891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10429587g0010 No alias B2 protein OS=Daucus carota (sp|p37707|b2_dauca : 92.8) 0.02 OrthoFinder output from all 47 species
MA_121889g0010 No alias B2 protein OS=Daucus carota (sp|p37707|b2_dauca : 98.2) 0.05 OrthoFinder output from all 47 species
MA_15917g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g02966 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30681 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08808 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g074380.4.1 Solyc09g074380 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g04772 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g05292 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g06353 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g06576 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11503 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g11517 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g29349 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g36300 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09126 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g31736 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e015817_P001 Zm00001e015817 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e030859_P001 Zm00001e030859 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e031085_P001 Zm00001e031085 B2 protein OS=Daucus carota (sp|p37707|b2_dauca : 113.0) 0.02 OrthoFinder output from all 47 species
Zm00001e031088_P005 Zm00001e031088 B2 protein OS=Daucus carota (sp|p37707|b2_dauca : 110.0) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043484 regulation of RNA splicing IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP HCCA
BP GO:0050684 regulation of mRNA processing IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0080009 mRNA methylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002934 Polymerase_NTP_transf_dom 562 597
IPR013989 Dev_and_cell_death_domain 25 158
No external refs found!