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  5. Len_g30630

Len_g30630


Description : regulatory E3 ubiquitin ligase (APD) involved in gametogenesis & original description: none


Gene families : OG0001688 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001688_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g30630

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00246370 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g018178 No alias regulatory E3 ubiquitin ligase (APD) involved in... 0.03 OrthoFinder output from all 47 species
Als_g07955 No alias regulatory E3 ubiquitin ligase (APD) involved in... 0.03 OrthoFinder output from all 47 species
Aob_g22634 No alias regulatory E3 ubiquitin ligase (APD) involved in... 0.04 OrthoFinder output from all 47 species
GSVIVT01000174001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01024737001 No alias No description available 0.02 OrthoFinder output from all 47 species
Lfl_g24596 No alias regulatory E3 ubiquitin ligase (APD) involved in... 0.04 OrthoFinder output from all 47 species
MA_10432900g0010 No alias no description available(sp|q6dbh0|apd2_arath : 91.7) 0.06 OrthoFinder output from all 47 species
MA_66746g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
CC GO:0030014 CCR4-NOT complex IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
CC GO:0042579 microbody IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR032010 APD1-4_M 200 276
IPR032008 APD1-4_N 107 174
No external refs found!