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  5. Len_g29883

Len_g29883


Description : not classified & original description: none


Gene families : OG0000027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g29883

Target Alias Description ECC score Gene Family Method Actions
Ala_g19953 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g19104 No alias protease *(SBT1) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g33047 SLP3 protease *(SBT2) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46307 XSP1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50706 XSP1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g53850.1 LOC_Os02g53850 Subtilisin-like protease SBT1.4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Len_g50373 No alias protease *(SBT4) & original description: none 0.03 OrthoFinder output from all 47 species
MA_179960g0010 No alias protease (SBT1) 0.02 OrthoFinder output from all 47 species
Ppi_g56629 No alias protease *(SBT1) & original description: none 0.03 OrthoFinder output from all 47 species
Smo414627 No alias Subtilisin-like protease SBT4.10 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Spa_g56809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016048_P002 Zm00001e016048 protease (SBT1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEA Interproscan
MF GO:0008236 serine-type peptidase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
InterPro domains Description Start Stop
IPR000209 Peptidase_S8/S53_dom 3 77
No external refs found!