Len_g28451 (GCT)

Aliases : GCT

Description : component *(MED13) of kinase module of MEDIATOR transcription co-activator complex & original description: none

Gene families : OG0005581 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005581_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g28451

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00198p00028070	GCT,...	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
AT1G55325	GCT	RNA polymerase II transcription mediators	0.08	OrthoFinder output from all 47 species
Ala_g37172	GCT	component *(MED13) of kinase module of MEDIATOR...	0.1	OrthoFinder output from all 47 species
Aob_g28951	GCT	component *(MED13) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Aspi01Gene47629.t1	GCT, Aspi01Gene47629	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0015.g014125	GCT	component *(MED13) of kinase module of MEDIATOR...	0.04	OrthoFinder output from all 47 species
Ceric.39G047500.1	GCT, Ceric.39G047500	component *(MED13) of kinase module of MEDIATOR...	0.07	OrthoFinder output from all 47 species
Ehy_g17091	GCT	component *(MED13) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
GSVIVT01025465001	GCT	RNA biosynthesis.RNA polymerase II-dependent...	0.05	OrthoFinder output from all 47 species
Gb_30550	GCT	component MED13 of kinase module of MEDIATOR...	0.07	OrthoFinder output from all 47 species
LOC_Os05g37500.1	GCT, LOC_Os05g37500	component MED13 of kinase module of MEDIATOR...	0.07	OrthoFinder output from all 47 species
Lfl_g29089	GCT	component *(MED13) of kinase module of MEDIATOR...	0.02	OrthoFinder output from all 47 species
MA_577306g0010	GCT	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_84527g0010	GCT	component MED13 of kinase module of MEDIATOR...	0.02	OrthoFinder output from all 47 species
Mp1g01940.1	GCT	component MED13 of kinase module of MEDIATOR...	0.05	OrthoFinder output from all 47 species
Msp_g14816	GCT	component *(MED13) of kinase module of MEDIATOR...	0.08	OrthoFinder output from all 47 species
Ore_g36609	GCT	component *(MED13) of kinase module of MEDIATOR...	0.05	OrthoFinder output from all 47 species
Ppi_g03289	GCT	component *(MED13) of kinase module of MEDIATOR...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0231.g026430	GCT	component *(MED13) of kinase module of MEDIATOR...	0.04	OrthoFinder output from all 47 species
Sam_g17992	No alias	component *(MED13) of kinase module of MEDIATOR...	0.05	OrthoFinder output from all 47 species
Smo447924	GCT	RNA biosynthesis.RNA polymerase II-dependent...	0.03	OrthoFinder output from all 47 species
Solyc04g039950.4.1	GCT, Solyc04g039950	component MED13 of kinase module of MEDIATOR...	0.06	OrthoFinder output from all 47 species
Tin_g13284	GCT	component *(MED13) of kinase module of MEDIATOR...	0.03	OrthoFinder output from all 47 species
Zm00001e036721_P002	GCT, Zm00001e036721	component MED13 of kinase module of MEDIATOR...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003712	transcription coregulator activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016592	mediator complex	IEA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041285	MID_MedPIWI	1299	1417
IPR041285	MID_MedPIWI	1182	1291
IPR009401	Med13_C	1577	1672

External Links

No external refs found!

Len_g28451 (GCT)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation