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  5. Len_g28085

Len_g28085


Description : EC_2.1 transferase transferring one-carbon group & original description: none


Gene families : OG0000545 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000545_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g28085

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01010463001 No alias Solute transport.carrier-mediated transport.DMT... 0.03 OrthoFinder output from all 47 species
GSVIVT01010468001 CCOAMT Cell wall.lignin.monolignol synthesis.caffeoyl-CoA... 0.02 OrthoFinder output from all 47 species
GSVIVT01010469001 CCOAMT Cell wall.lignin.monolignol synthesis.caffeoyl-CoA... 0.03 OrthoFinder output from all 47 species
GSVIVT01022100001 CCoAOMT1 Cell wall.lignin.monolignol synthesis.caffeoyl-CoA... 0.02 OrthoFinder output from all 47 species
Solyc02g093250.3.1 CCoAOMT1, Solyc02g093250 caffeoyl-CoA 3-O-methyltransferase (CCoA-OMT) 0.02 OrthoFinder output from all 47 species
Zm00001e030087_P002 CCoAOMT1, Zm00001e030087 caffeoyl-CoA 3-O-methyltransferase (CCoA-OMT) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008171 O-methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR002935 SAM_O-MeTrfase 78 274
No external refs found!