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  5. Len_g27981

Len_g27981 (PRHA)


Aliases : PRHA

Description : PHD-type transcription factor & original description: none


Gene families : OG0002217 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002217_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g27981

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00159760 PRHA,... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
Adi_g089260 PRHA PHD-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g011121 PRHA PHD-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G036500.1 PRHA, Ceric.21G036500 PHD-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
LOC_Os02g05450.1 PRHA, LOC_Os02g05450 transcription factor (PHD) 0.04 OrthoFinder output from all 47 species
LOC_Os06g12400.1 HAT3.1, LOC_Os06g12400 transcription factor (PHD) 0.03 OrthoFinder output from all 47 species
Sam_g13870 No alias PHD-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013656_P001 PRHA, Zm00001e013656 transcription factor (PHD) 0.02 OrthoFinder output from all 47 species
Zm00001e019808_P001 HAT3.1, Zm00001e019808 transcription factor (PHD) 0.03 OrthoFinder output from all 47 species
Zm00001e029056_P003 HAT3.1, Zm00001e029056 transcription factor (PHD) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 248 303
IPR001356 Homeobox_dom 517 567
No external refs found!