Len_g27857 (RAD23A)

Aliases : RAD23A

Description : ubiquitin-proteasome shuttle factor *(RAD23) & original description: none

Gene families : OG0001068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001068_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g27857
Cluster	HCCA: Cluster_131

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00156p00078120	RAD23D,...	Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder output from all 47 species
Adi_g010379	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Als_g20571	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Aop_g31214	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Cre08.g366400	RAD23B, RAD23	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Ehy_g05822	RAD23D	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g06750	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
LOC_Os08g33340.1	RAD23D, LOC_Os08g33340	shuttle protein (RAD23)	0.02	OrthoFinder output from all 47 species
MA_47454g0010	RAD23D	shuttle protein (RAD23)	0.04	OrthoFinder output from all 47 species
Mp1g26290.1	RAD23B, RAD23	shuttle protein (RAD23)	0.06	OrthoFinder output from all 47 species
Msp_g06770	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Nbi_g04293	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.07	OrthoFinder output from all 47 species
Nbi_g35763	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Ppi_g63807	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Smo77427	RAD23B, RAD23	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Smo82644	RAD23B, RAD23	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Spa_g06239	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Spa_g18087	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003854	3-beta-hydroxy-delta5-steroid dehydrogenase activity	IEP	HCCA
MF	GO:0003993	acid phosphatase activity	IEP	HCCA
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	HCCA
MF	GO:0005096	GTPase activator activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006694	steroid biosynthetic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007264	small GTPase mediated signal transduction	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
BP	GO:0008202	steroid metabolic process	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
CC	GO:0008250	oligosaccharyltransferase complex	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016229	steroid dehydrogenase activity	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0033764	steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	3	76
IPR015360	XPC-bd	272	328
IPR015940	UBA	160	198
IPR015940	UBA	354	389

External Links

No external refs found!

Len_g27857 (RAD23A)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation