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  5. Len_g25718

Len_g25718


Description : DNA primase and helicase *(TWINKLE) & original description: none


Gene families : OG0002154 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002154_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g25718

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00034370 evm_27.TU.AmTr_v1... Cell cycle.organelle machineries.DNA replication.DNA... 0.02 OrthoFinder output from all 47 species
AT1G30680 No alias toprim domain-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g023450 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07413 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z069600.1 Ceric.1Z069600 DNA primase and helicase *(TWINKLE) & original... 0.05 OrthoFinder output from all 47 species
Mp7g12970.1 No alias DNA primase and helicase (TWINKLE) 0.03 OrthoFinder output from all 47 species
Solyc02g022830.3.1 Solyc02g022830 DNA primase and helicase (TWINKLE) 0.06 OrthoFinder output from all 47 species
Spa_g11494 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08851 No alias DNA primase and helicase *(TWINKLE) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e030349_P002 Zm00001e030349 DNA primase and helicase (TWINKLE) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003937 IMP cyclohydrolase activity IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0042579 microbody IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007694 DNA_helicase_DnaB-like_C 435 685
IPR006171 TOPRIM_domain 279 371
No external refs found!