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  5. Len_g24108

Len_g24108 (HAI3)


Aliases : HAI3

Description : clade A phosphatase & original description: none


Gene families : OG0000226 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000226_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g24108

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g46760.1 PP2CA, ATPP2CA,... clade A phosphatase 0.06 OrthoFinder output from all 47 species
LOC_Os01g62760.1 HAI2, LOC_Os01g62760 clade A phosphatase 0.02 OrthoFinder output from all 47 species
GATA5, Solyc01g110310MA_10431543g0010 AtABI1, ABI1 clade A phosphatase 0.03 OrthoFinder output from all 47 species
Nbi_g06683 PP2CA, ATPP2CA, AHG3 clade A phosphatase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g39053 HAB2 clade A phosphatase & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g58486 PP2CA, ATPP2CA, AHG3 clade A phosphatase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g096670.3.1 PP2CA, ATPP2CA,... clade A phosphatase 0.04 OrthoFinder output from all 47 species
Solyc06g076400.3.1 PP2CA, ATPP2CA,... clade A phosphatase 0.03 OrthoFinder output from all 47 species
Zm00001e001189_P001 HAI2, Zm00001e001189 clade A phosphatase 0.04 OrthoFinder output from all 47 species
Zm00001e019296_P001 PP2CA, ATPP2CA,... clade A phosphatase 0.03 OrthoFinder output from all 47 species
Zm00001e028759_P001 HAI3, Zm00001e028759 clade A phosphatase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase-like_dom 101 360
No external refs found!