Len_g23119 (emb1138)

Aliases : emb1138

Description : group-II intron splicing RNA helicase *(RH3) & original description: none

Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g23119

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00168720	emb1138,...	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
AMTR_s00126p00110160	PMH2, ATRH53,...	RNA processing.organelle machineries.RNA...	0.05	OrthoFinder output from all 47 species
Adi_g056600	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g086708	emb1138	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g09920	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Als_g07437	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Als_g26679	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Aob_g15554	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Aop_g04482	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000093.151	emb1138	DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays	0.01	OrthoFinder output from all 47 species
Dac_g08101	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Gb_04849	emb1138	RH3 plastidial RNA basal splicing factor	0.02	OrthoFinder output from all 47 species
Gb_10087	PMH2, ATRH53	DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
LOC_Os03g61220.1	emb1138, LOC_Os03g61220	RH3 plastidial RNA basal splicing factor	0.03	OrthoFinder output from all 47 species
Msp_g07724	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Pir_g19704	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Ppi_g43098	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Sam_g13634	No alias	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Solyc12g006320.3.1	PMH2, ATRH53,...	RNA helicase (PMH)	0.02	OrthoFinder output from all 47 species
Spa_g17328	emb1138	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g07132	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e003219_P001	PMH2, ATRH53,...	RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	766	782
IPR011545	DEAD/DEAH_box_helicase_dom	175	346
IPR001650	Helicase_C	384	492
IPR012562	GUCT	579	682

External Links

No external refs found!

Len_g23119 (emb1138)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation