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  5. Len_g22954

Len_g22954 (MSH7, ATMSH7, MSH6-2)


Aliases : MSH7, ATMSH7, MSH6-2

Description : component *(MSH7) of MSH2-x mismatch repair heterodimers & original description: none


Gene families : OG0001663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001663_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g22954

Target Alias Description ECC score Gene Family Method Actions
Lfl_g02400 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.02 OrthoFinder output from all 47 species
MA_14434g0010 MSH6-1, ATMSH6, MSH6 DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Tin_g15143 MSH6-1, ATMSH6, MSH6 component *(MSH6) of MSH2-x mismatch repair heterodimers... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
InterPro domains Description Start Stop
IPR007695 DNA_mismatch_repair_MutS-lik_N 202 314
IPR007860 DNA_mmatch_repair_MutS_con_dom 340 474
IPR007696 DNA_mismatch_repair_MutS_core 501 727
IPR000432 DNA_mismatch_repair_MutS_C 791 995
No external refs found!