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  5. Len_g20957

Len_g20957 (SR30, ATSRP30, At-SR30)


Aliases : SR30, ATSRP30, At-SR30

Description : RNA splicing factor *(SR30/34) & original description: none


Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g20957

Target Alias Description ECC score Gene Family Method Actions
AT1G02840 At-SR34, SRP34,... RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
AT4G02430 SR34b, At-SR34b RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
Cba_g24620 SR34b, At-SR34b RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G062100.1 SR30, ATSRP30,... RNA splicing factor *(SR30/34) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.11G080500.1 At-SR34a, SR34a,... RNA splicing factor *(SR30/34) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.23G039200.1 At-SR34a, SR34a,... RNA splicing factor *(SR30/34) & original description:... 0.03 OrthoFinder output from all 47 species
Cre06.g278239 SR30, ATSRP30, At-SR30 RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Dac_g12144 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g39694 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01038636001 At-SR34a, SR34a, SRp34a RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Gb_24206 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os03g22380.1 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.03 OrthoFinder output from all 47 species
LOC_Os07g47630.1 SR30, ATSRP30,... SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Ppi_g29717 At-SR34, SRP34,... RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14701 No alias RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g19709 No alias RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g075090.1.1 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.05 OrthoFinder output from all 47 species
Spa_g04177 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17256 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g00604 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 53 119
IPR000504 RRM_dom 153 217
No external refs found!