Len_g20647

Description : component *(FES1) of FRI-C transcription effector complex & original description: none

Gene families : OG0000859 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000859_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g20647

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00071p00110320	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C3H zinc...	0.07	OrthoFinder output from all 47 species
AMTR_s00154p00087040	evm_27.TU.AmTr_v1...	No description available	0.07	OrthoFinder output from all 47 species
AT3G18640	No alias	Zinc finger C-x8-C-x5-C-x3-H type family protein	0.03	OrthoFinder output from all 47 species
Adi_g020080	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Adi_g051624	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g086845	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Ala_g14556	No alias	component *(FES1) of FRI-C transcription effector...	0.07	OrthoFinder output from all 47 species
Als_g05138	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Als_g21455	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g27332	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Aop_g31626	No alias	component *(FES1) of FRI-C transcription effector...	0.05	OrthoFinder output from all 47 species
Aspi01Gene04156.t1	Aspi01Gene04156	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Aspi01Gene22257.t1	Aspi01Gene22257	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Aspi01Gene71346.t1	Aspi01Gene71346	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Ceric.20G066500.1	Ceric.20G066500	component *(FES1) of FRI-C transcription effector...	0.04	OrthoFinder output from all 47 species
Ceric.29G050700.1	Ceric.29G050700	component *(FES1) of FRI-C transcription effector...	0.08	OrthoFinder output from all 47 species
Cre01.g003450	No alias	No description available	0.03	OrthoFinder output from all 47 species
Dac_g06929	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Dcu_g07178	No alias	component *(FES1) of FRI-C transcription effector...	0.06	OrthoFinder output from all 47 species
Ehy_g16622	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Ehy_g16623	No alias	component *(FES1) of FRI-C transcription effector...	0.04	OrthoFinder output from all 47 species
Ehy_g18865	No alias	component *(FES1) of FRI-C transcription effector...	0.02	OrthoFinder output from all 47 species
Ehy_g26937	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
GSVIVT01008114001	No alias	Zinc finger CCCH domain-containing protein 38...	0.06	OrthoFinder output from all 47 species
GSVIVT01010035001	ACCD	RNA biosynthesis.transcriptional activation.C3H zinc...	0.04	OrthoFinder output from all 47 species
Gb_00875	No alias	C3H zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Gb_19122	No alias	C3H zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Gb_26302	No alias	C3H zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
LOC_Os05g41790.1	LOC_Os05g41790	C3H zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os08g04170.1	LOC_Os08g04170	C3H zinc finger transcription factor	0.1	OrthoFinder output from all 47 species
Lfl_g05738	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Lfl_g29094	No alias	component *(FES1) of FRI-C transcription effector...	0.05	OrthoFinder output from all 47 species
MA_10435667g0010	No alias	Zinc finger CCCH domain-containing protein 38...	0.03	OrthoFinder output from all 47 species
MA_10435667g0020	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_111475g0010	No alias	Zinc finger CCCH domain-containing protein 55 OS=Oryza...	0.02	OrthoFinder output from all 47 species
MA_111475g0020	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_321233g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_8408g0030	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp1g05400.1	No alias	Zinc finger CCCH domain-containing protein 55 OS=Oryza...	0.06	OrthoFinder output from all 47 species
Msp_g19470	No alias	component *(FES1) of FRI-C transcription effector...	0.04	OrthoFinder output from all 47 species
Nbi_g04479	No alias	component *(FES1) of FRI-C transcription effector...	0.06	OrthoFinder output from all 47 species
Ore_g30501	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Ore_g37073	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Pir_g41479	No alias	component *(FES1) of FRI-C transcription effector...	0.04	OrthoFinder output from all 47 species
Pir_g61674	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Ppi_g11003	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Solyc03g006350.3.1	FES1, Solyc03g006350	C3H zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Solyc04g064800.4.1	Solyc04g064800	C3H zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Spa_g17866	No alias	component *(FES1) of FRI-C transcription effector...	0.03	OrthoFinder output from all 47 species
Tin_g10851	No alias	component *(FES1) of FRI-C transcription effector...	0.05	OrthoFinder output from all 47 species
Zm00001e040314_P001	Zm00001e040314	C3H zinc finger transcription factor	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000061	Surp	251	301

External Links

No external refs found!

Len_g20647

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation