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  5. Len_g20603

Len_g20603


Description : not classified & original description: none


Gene families : OG0000708 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000708_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g20603

Target Alias Description ECC score Gene Family Method Actions
AT1G24300 No alias GYF domain-containing protein 0.07 OrthoFinder output from all 47 species
AT1G27430 No alias GYF domain-containing protein 0.07 OrthoFinder output from all 47 species
Adi_g055823 No alias susceptibility factor *(EXA1) & original description: none 0.08 OrthoFinder output from all 47 species
Adi_g086400 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g48838 No alias susceptibility factor *(EXA1) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g09024 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g37682 No alias susceptibility factor *(EXA1) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g14645 No alias susceptibility factor *(EXA1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22450 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55227 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17703 No alias susceptibility factor *(EXA1) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g08149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70568 No alias susceptibility factor *(EXA1) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0448.g070692 No alias susceptibility factor *(EXA1) & original description:... 0.04 OrthoFinder output from all 47 species
Cba_g26998 No alias susceptibility factor *(EXA1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G008600.1 Ceric.18G008600 susceptibility factor *(EXA1) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.18G048100.1 Ceric.18G048100 susceptibility factor *(EXA1) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.33G057600.1 Ceric.33G057600 susceptibility factor *(EXA1) & original description:... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000704.56 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g05846 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g39021 No alias susceptibility factor *(EXA1) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22181 No alias susceptibility factor *(EXA1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15753 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01000921001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01000922001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01009695001 No alias No description available 0.06 OrthoFinder output from all 47 species
GSVIVT01033051001 No alias No description available 0.05 OrthoFinder output from all 47 species
LOC_Os01g69990.1 LOC_Os01g69990 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os07g04530.1 LOC_Os07g04530 susceptibility factor (EXA1) 0.02 OrthoFinder output from all 47 species
Lfl_g04295 No alias susceptibility factor *(EXA1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07445 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g16227 No alias susceptibility factor *(EXA1) & original description: none 0.05 OrthoFinder output from all 47 species
MA_10117g0030 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_10425836g0010 No alias susceptibility factor (EXA1) 0.08 OrthoFinder output from all 47 species
MA_10425836g0020 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp8g07340.1 No alias susceptibility factor (EXA1) 0.04 OrthoFinder output from all 47 species
Msp_g20541 No alias susceptibility factor *(EXA1) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44868 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g03874 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g06775 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g16118 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g23458 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g54992 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014813 No alias susceptibility factor *(EXA1) & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0106.g020268 No alias not classified & original description: CDS=337-2907 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0164.g024075 No alias susceptibility factor *(EXA1) & original description: CDS=1-5616 0.04 OrthoFinder output from all 47 species
Sam_g29247 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo438556 No alias No description available 0.02 OrthoFinder output from all 47 species
Smo438614 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc04g080240.4.1 Solyc04g080240 susceptibility factor (EXA1) 0.03 OrthoFinder output from all 47 species
Solyc05g015920.3.1 Solyc05g015920 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc05g015930.4.1 Solyc05g015930 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g46291 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35687 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e028423_P003 Zm00001e028423 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e028424_P001 Zm00001e028424 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e032780_P001 Zm00001e032780 susceptibility factor (EXA1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003169 GYF 606 640
No external refs found!