Len_g20483


Description : histone demethylase *(PKDM8) & original description: none


Gene families : OG0002434 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002434_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g20483

Target Alias Description ECC score Gene Family Method Actions
Ala_g19823 No alias histone demethylase *(PKDM8) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g52529 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20350 No alias histone demethylase *(PKDM8) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G112300.1 Ceric.04G112300 histone demethylase *(PKDM8) & original description:... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020603.73 PKDM7D RNA biosynthesis.transcriptional activation.JUMONJI... 0.01 OrthoFinder output from all 47 species
Dcu_g04152 No alias histone demethylase *(PKDM8) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11025 No alias histone demethylase *(PKDM8) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024382001 No alias Protein modification.phosphorylation.TKL kinase... 0.02 OrthoFinder output from all 47 species
Gb_21111 No alias histone demethylase (PKDM8). transcription factor (JUMONJI) 0.05 OrthoFinder output from all 47 species
LOC_Os10g42690.1 LOC_Os10g42690 histone demethylase (PKDM8). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Nbi_g05487 No alias histone demethylase *(PKDM8) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g41949 No alias histone demethylase *(PKDM8) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g076390.3.1 Solyc08g076390 histone demethylase (PKDM8). transcription factor (JUMONJI) 0.03 OrthoFinder output from all 47 species
Spa_g26750 No alias histone demethylase *(PKDM8) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e012998_P005 Zm00001e012998 histone demethylase (PKDM8). transcription factor (JUMONJI) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003347 JmjC_dom 242 365
IPR004198 Znf_C5HC2 458 509
IPR003349 JmjN 65 98
No external refs found!