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  5. Len_g20147

Len_g20147


Description : not classified & original description: none


Gene families : OG0001358 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001358_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g20147

Target Alias Description ECC score Gene Family Method Actions
AT3G63300 FKD1 FORKED 1 0.05 OrthoFinder output from all 47 species
AT4G14740 No alias Plant protein of unknown function (DUF828) with plant... 0.03 OrthoFinder output from all 47 species
Als_g07023 FKD1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene15909.t1 Aspi01Gene15909 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0028.g023814 No alias not classified & original description: CDS=173-1201 0.05 OrthoFinder output from all 47 species
Ceric.39G003100.1 Ceric.39G003100 not classified & original description: pacid=50582359... 0.05 OrthoFinder output from all 47 species
LOC_Os12g41140.1 LOC_Os12g41140 VAN3-binding protein OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Len_g01276 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_90368g0010 No alias VAN3-binding protein OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g12084 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15899 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g10995 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g12100 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e005060_P001 Zm00001e005060 VAN3-binding protein OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e012419_P002 Zm00001e012419 VAN3-binding protein OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR013666 PH_pln 456 551
IPR008546 VAN3-bd-like_auxin_canal 127 388
No external refs found!