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  5. Len_g19715

Len_g19715


Description : SSU processome assembly factor *(UTP2/NOP14) & original description: none


Gene families : OG0006351 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006351_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g19715

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00175730 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
AT1G69070 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.02 OrthoFinder output from all 47 species
Aev_g04842 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.02 OrthoFinder output from all 47 species
Ala_g20715 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.03 OrthoFinder output from all 47 species
Aop_g09330 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.06 OrthoFinder output from all 47 species
Cba_g38222 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.03 OrthoFinder output from all 47 species
Ceric.29G019800.1 Ceric.29G019800 SSU processome assembly factor *(UTP2/NOP14) & original... 0.03 OrthoFinder output from all 47 species
Cre06.g260850 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Dcu_g03088 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.09 OrthoFinder output from all 47 species
Dde_g23879 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01012255001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
LOC_Os03g40110.1 LOC_Os03g40110 SSU processome assembly factor (UTP2/NOP14) 0.03 OrthoFinder output from all 47 species
Ore_g32784 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.03 OrthoFinder output from all 47 species
Pir_g19965 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.04 OrthoFinder output from all 47 species
Sam_g35268 No alias SSU processome assembly factor *(UTP2/NOP14) & original... 0.04 OrthoFinder output from all 47 species
Solyc05g011990.4.1 Solyc05g011990 SSU processome assembly factor (UTP2/NOP14) 0.02 OrthoFinder output from all 47 species
Zm00001e004967_P001 Zm00001e004967 SSU processome assembly factor (UTP2/NOP14) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0032040 small-subunit processome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007276 Nop14 50 904
No external refs found!