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  5. Len_g19136

Len_g19136


Description : CORVET-specific component *(VPS8) of HOPS/CORVET membrane tethering complexes & original description: none


Gene families : OG0004817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004817_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g19136

Target Alias Description ECC score Gene Family Method Actions
AT4G00800 No alias transducin family protein / WD-40 repeat family protein 0.05 OrthoFinder output from all 47 species
Adi_g104722 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.04 OrthoFinder output from all 47 species
Ala_g12813 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.04 OrthoFinder output from all 47 species
Als_g32080 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.04 OrthoFinder output from all 47 species
Aob_g31629 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.04 OrthoFinder output from all 47 species
Aop_g27461 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
Aspi01Gene38237.t1 Aspi01Gene38237 CORVET-specific component *(VPS8) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
Ceric.08G032600.1 Ceric.08G032600 CORVET-specific component *(VPS8) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
Cre13.g606350 No alias No description available 0.03 OrthoFinder output from all 47 species
Ehy_g19649 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
GSVIVT01027438001 No alias Vesicle trafficking.target membrane... 0.04 OrthoFinder output from all 47 species
Gb_27586 No alias CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Lfl_g29102 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.08 OrthoFinder output from all 47 species
MA_10432728g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp8g08230.1 No alias CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Ppi_g45359 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
Solyc05g044610.3.1 Solyc05g044610 CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
Tin_g15163 No alias CORVET-specific component *(VPS8) of HOPS/CORVET... 0.04 OrthoFinder output from all 47 species
Zm00001e013515_P001 Zm00001e013515 CORVET-specific component VPS8 of HOPS/CORVET membrane... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000547 Clathrin_H-chain/VPS_repeat 1486 1552
IPR025941 Vps8_central_dom 986 1174
No external refs found!