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  5. Len_g17988

Len_g17988


Description : not classified & original description: none


Gene families : OG0008022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008022_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g17988
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Adi_g017397 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g020211 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033742 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034260 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g046619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g068935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g105168 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g29947 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_05438 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_99947g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016849 phosphorus-oxygen lyase activity IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 328 375
IPR002885 Pentatricopeptide_repeat 123 170
IPR002885 Pentatricopeptide_repeat 227 274
IPR002885 Pentatricopeptide_repeat 430 477
IPR002885 Pentatricopeptide_repeat 24 53
IPR002885 Pentatricopeptide_repeat 98 120
No external refs found!