Len_g16882

Description : assembly factor involved in RuBisCo assembly *(RAF2) & original description: none

Gene families : OG0002088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g16882
Cluster	HCCA: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
AT5G51110	No alias	Transcriptional coactivator/pterin dehydratase	0.08	OrthoFinder output from all 47 species
Adi_g046909	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.05	OrthoFinder output from all 47 species
Aev_g01920	No alias	EC_4.2 carbon-oxygen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g08845	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.06	OrthoFinder output from all 47 species
Als_g04074	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.06	OrthoFinder output from all 47 species
Aob_g04878	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene54106.t1	Aspi01Gene54106	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.03	OrthoFinder output from all 47 species
Cba_g03739	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.03	OrthoFinder output from all 47 species
ChrSy.fgenesh.mRNA.86	No alias	RAF2 assembly factor involved in RuBisCo assembly	0.02	OrthoFinder output from all 47 species
Cre01.g049000	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.05	OrthoFinder output from all 47 species
Dac_g02570	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.04	OrthoFinder output from all 47 species
Dde_g33347	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.04	OrthoFinder output from all 47 species
Ehy_g03244	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.11	OrthoFinder output from all 47 species
GSVIVT01013845001	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.14	OrthoFinder output from all 47 species
Gb_11396	No alias	RAF2 assembly factor involved in RuBisCo assembly	0.13	OrthoFinder output from all 47 species
Lfl_g27503	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.09	OrthoFinder output from all 47 species
MA_167002g0010	No alias	RAF2 assembly factor involved in RuBisCo assembly	0.04	OrthoFinder output from all 47 species
Mp2g24300.1	No alias	RAF2 assembly factor involved in RuBisCo assembly	0.13	OrthoFinder output from all 47 species
Msp_g42207	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.04	OrthoFinder output from all 47 species
Nbi_g03969	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.06	OrthoFinder output from all 47 species
Pir_g09993	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.04	OrthoFinder output from all 47 species
Ppi_g04239	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.04	OrthoFinder output from all 47 species
Smo97725	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.03	OrthoFinder output from all 47 species
Solyc03g094175.1.1	Solyc03g094175	RAF2 assembly factor involved in RuBisCo assembly	0.11	OrthoFinder output from all 47 species
Solyc03g094177.1.1	Solyc03g094177	RAF2 assembly factor involved in RuBisCo assembly	0.11	OrthoFinder output from all 47 species
Spa_g06443	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.05	OrthoFinder output from all 47 species
Tin_g07481	No alias	assembly factor involved in RuBisCo assembly *(RAF2) &...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019751	polyol metabolic process	None	Extended
BP	GO:0034311	diol metabolic process	None	Extended
BP	GO:0034312	diol biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042558	pteridine-containing compound metabolic process	None	Extended
BP	GO:0042559	pteridine-containing compound biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046146	tetrahydrobiopterin metabolic process	None	Extended
BP	GO:0046165	alcohol biosynthetic process	None	Extended
BP	GO:0046173	polyol biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
MF	GO:0008942	nitrite reductase [NAD(P)H] activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
MF	GO:0030145	manganese ion binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
MF	GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:0098809	nitrite reductase activity	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001533	Pterin_deHydtase	126	219

External Links

No external refs found!

Len_g16882

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation