Len_g14959 (OBP3)

Aliases : OBP3

Description : transcription factor *(DOF) & original description: none

Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g14959

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00176640	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
AT3G45610	No alias	Dof-type zinc finger DNA-binding family protein	0.02	OrthoFinder output from all 47 species
AT4G38000	DOF4.7	DNA binding with one finger 4.7	0.03	OrthoFinder output from all 47 species
Adi_g041204	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g074897	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g72531	CDF2	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g00792	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g13892	OBP1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01024986001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
LOC_Os02g15350.1	LOC_Os02g15350	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
LOC_Os04g58190.1	LOC_Os04g58190	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
LOC_Os10g26620.1	CDF1, LOC_Os10g26620	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Len_g10876	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g22159	ADOF1, DOF1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g01681	CDF2	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g23147	CDF3	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g20790.1	TMO6	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Msp_g12603	ADOF1, DOF1	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g17212	OBP3	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g41458	OBP4	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g09266	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g32547	CDF3	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012870	TMO6	transcription factor *(DOF) & original description: CDS=1-1464	0.03	OrthoFinder output from all 47 species
Solyc02g078620.1.1	ADOF2, DOF2,...	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc03g112930.3.1	HCA2, DOF5.6,...	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Solyc05g054510.2.1	OBP3, Solyc05g054510	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Solyc08g082910.2.1	Solyc08g082910	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e000526_P001	CDF3, Zm00001e000526	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e023218_P004	Zm00001e023218	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Zm00001e038479_P002	OBP3, Zm00001e038479	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Zm00001e041944_P001	Zm00001e041944	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004096	catalase activity	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	12	66

External Links

No external refs found!

Len_g14959 (OBP3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation