Len_g14364


Description : chromatin remodeling factor *(Rad5-like) & original description: none


Gene families : OG0002085 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002085_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g14364
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
Solyc07g051960.3.1 Solyc07g051960 chromatin remodeling factor (Rad5-like) 0.02 OrthoFinder output from all 47 species
Solyc07g051970.3.1 Solyc07g051970 chromatin remodeling factor (Rad5-like) 0.02 OrthoFinder output from all 47 species
Solyc10g049750.3.1 Solyc10g049750 chromatin remodeling factor (Rad5-like) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 436 651
IPR001650 Helicase_C 771 878
IPR000330 SNF2_N 189 315
No external refs found!