Len_g13746 (AT-RSH2, ATRSH2, RSH2)

Aliases : AT-RSH2, ATRSH2, RSH2

Description : bifunctional ppGpp synthetase and hydrolase *(RSH) & original description: none

Gene families : OG0001778 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001778_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g13746

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00240620	AT-RSH2, ATRSH2,...	Probable GTP diphosphokinase RSH2, chloroplastic...	0.02	OrthoFinder output from all 47 species
AT1G54130	RSH3, AT-RSH3, ATRSH3	RELA/SPOT homolog 3	0.03	OrthoFinder output from all 47 species
AT3G14050	AT-RSH2, ATRSH2, RSH2	RELA/SPOT homolog 2	0.06	OrthoFinder output from all 47 species
Adi_g008897	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g14030	AT-RSH2, ATRSH2, RSH2	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.04	OrthoFinder output from all 47 species
Ala_g12960	AT-RSH2, ATRSH2, RSH2	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.06	OrthoFinder output from all 47 species
Azfi_s0072.g037047	RSH3, AT-RSH3, ATRSH3	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.03	OrthoFinder output from all 47 species
Azfi_s0104.g044819	RSH3, AT-RSH3, ATRSH3	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.03	OrthoFinder output from all 47 species
Azfi_s1463.g103412	AT-RSH2, ATRSH2, RSH2	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.04	OrthoFinder output from all 47 species
Ceric.12G079500.1	AT-RSH2, ATRSH2,...	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.08	OrthoFinder output from all 47 species
Dac_g02876	AT-RSH2, ATRSH2, RSH2	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.06	OrthoFinder output from all 47 species
Dcu_g01874	AT-RSH2, ATRSH2, RSH2	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.03	OrthoFinder output from all 47 species
Ehy_g01517	AT-RSH2, ATRSH2, RSH2	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.03	OrthoFinder output from all 47 species
Lfl_g28873	AT-RSH2, ATRSH2, RSH2	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.05	OrthoFinder output from all 47 species
MA_1897g0010	AT-RSH2, ATRSH2, RSH2	Probable GTP diphosphokinase RSH3, chloroplastic...	0.05	OrthoFinder output from all 47 species
Msp_g15249	AT-RSH2, ATRSH2, RSH2	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.04	OrthoFinder output from all 47 species
Nbi_g13999	RSH3, AT-RSH3, ATRSH3	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.02	OrthoFinder output from all 47 species
Pp3c6_16990V3.1	AT-RSH2, ATRSH2,...	RELA/SPOT homolog 2	0.01	OrthoFinder output from all 47 species
Ppi_g02349	RSH3, AT-RSH3, ATRSH3	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.03	OrthoFinder output from all 47 species
Ppi_g11332	RSH3, AT-RSH3, ATRSH3	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0385.g027331	AT-RSH2, ATRSH2, RSH2	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.03	OrthoFinder output from all 47 species
Solyc03g123370.3.1	AT-RSH2, ATRSH2,...	Probable GTP diphosphokinase RSH3, chloroplastic...	0.07	OrthoFinder output from all 47 species
Spa_g08599	RSH3, AT-RSH3, ATRSH3	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.06	OrthoFinder output from all 47 species
Tin_g46007	AT-RSH2, ATRSH2, RSH2	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.06	OrthoFinder output from all 47 species
Zm00001e004026_P001	AT-RSH2, ATRSH2,...	Probable GTP diphosphokinase RSH2, chloroplastic...	0.02	OrthoFinder output from all 47 species
Zm00001e009895_P002	AT-RSH2, ATRSH2,...	Probable GTP diphosphokinase RSH3, chloroplastic...	0.02	OrthoFinder output from all 47 species
Zm00001e034279_P001	RSH3, AT-RSH3,...	Probable GTP diphosphokinase RSH3, chloroplastic...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0033865	nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
MF	GO:0005546	phosphatidylinositol-4,5-bisphosphate binding	IEP	HCCA
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0005992	trehalose biosynthetic process	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006887	exocytosis	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	HCCA
MF	GO:1902936	phosphatidylinositol bisphosphate binding	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007685	RelA_SpoT	459	569

External Links

No external refs found!

Len_g13746 (AT-RSH2, ATRSH2, RSH2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation