Len_g13338 (SR30, ATSRP30, At-SR30)

Aliases : SR30, ATSRP30, At-SR30

Description : RNA splicing factor *(SR30/34) & original description: none

Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g13338

Target	Alias	Description	ECC score	Gene Family Method
AT1G02840	At-SR34, SRP34,...	RNA-binding (RRM/RBD/RNP motifs) family protein	0.02	OrthoFinder output from all 47 species
MA_11621g0010	At-SR34a, SR34a, SRp34a	SR30/34 RNA splicing factor	0.03	OrthoFinder output from all 47 species
Solyc03g082380.4.1	At-SR34a, SR34a,...	SR30/34 RNA splicing factor	0.03	OrthoFinder output from all 47 species
Zm00001e038219_P006	SR30, ATSRP30,...	SR30/34 RNA splicing factor	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016846	carbon-sulfur lyase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	9	75
IPR000504	RRM_dom	112	176

External Links

No external refs found!