Len_g12725 (THO7, AtTHO7)


Aliases : THO7, AtTHO7

Description : component *(THOC7) of mRNP trafficking THO subcomplex & original description: none


Gene families : OG0004772 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004772_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g12725
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
Als_g09188 THO7, AtTHO7 component *(THOC7) of mRNP trafficking THO subcomplex &... 0.06 OrthoFinder output from all 47 species
Azfi_s0015.g013703 THO7, AtTHO7 component *(THOC7) of mRNP trafficking THO subcomplex &... 0.04 OrthoFinder output from all 47 species
Cre03.g182350 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
Smo438744 THO7, AtTHO7 RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
Spa_g05269 THO7, AtTHO7 component *(THOC7) of mRNP trafficking THO subcomplex &... 0.08 OrthoFinder output from all 47 species
Tin_g02620 THO7, AtTHO7 component *(THOC7) of mRNP trafficking THO subcomplex &... 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000445 THO complex part of transcription export complex IEA Interproscan
BP GO:0006397 mRNA processing IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR008501 THOC7/Mft1 65 201
No external refs found!