Aliases : THO7, AtTHO7
Description : component *(THOC7) of mRNP trafficking THO subcomplex & original description: none
Gene families : OG0004772 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004772_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Len_g12725 | |
Cluster | HCCA: Cluster_138 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Als_g09188 | THO7, AtTHO7 | component *(THOC7) of mRNP trafficking THO subcomplex &... | 0.06 | OrthoFinder output from all 47 species | |
Azfi_s0015.g013703 | THO7, AtTHO7 | component *(THOC7) of mRNP trafficking THO subcomplex &... | 0.04 | OrthoFinder output from all 47 species | |
Cre03.g182350 | No alias | RNA processing.messenger ribonucleoprotein particle... | 0.02 | OrthoFinder output from all 47 species | |
Smo438744 | THO7, AtTHO7 | RNA processing.messenger ribonucleoprotein particle... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g05269 | THO7, AtTHO7 | component *(THOC7) of mRNP trafficking THO subcomplex &... | 0.08 | OrthoFinder output from all 47 species | |
Tin_g02620 | THO7, AtTHO7 | component *(THOC7) of mRNP trafficking THO subcomplex &... | 0.09 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000445 | THO complex part of transcription export complex | IEA | Interproscan |
BP | GO:0006397 | mRNA processing | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
CC | GO:0005840 | ribosome | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
BP | GO:0009058 | biosynthetic process | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | HCCA |
MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
MF | GO:0019843 | rRNA binding | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR008501 | THOC7/Mft1 | 65 | 201 |
No external refs found! |