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  5. Len_g12570

Len_g12570


Description : large subunit beta of AP-1 trans-Golgi network cargo adaptor complex & original description: none


Gene families : OG0001612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g12570

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00095780 evm_27.TU.AmTr_v1... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
AT4G23460 No alias Adaptin family protein 0.03 OrthoFinder output from all 47 species
AT5G11490 No alias adaptin family protein 0.02 OrthoFinder output from all 47 species
Als_g46996 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Aob_g04482 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
Aspi01Gene35260.t1 Aspi01Gene35260 large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
Ceric.13G014400.1 Ceric.13G014400 large subunit beta of AP-4 vacuole cargo adaptor complex... 0.06 OrthoFinder output from all 47 species
Cre11.g478156 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
Dcu_g01903 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
Dcu_g07725 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.06 OrthoFinder output from all 47 species
Ehy_g02851 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.03 OrthoFinder output from all 47 species
GSVIVT01019391001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from all 47 species
GSVIVT01035675001 No alias Vesicle trafficking.endomembrane trafficking.vacuolar... 0.04 OrthoFinder output from all 47 species
Gb_11857 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
LOC_Os01g43630.1 LOC_Os01g43630 large subunit beta of AP-4 vacuole cargo adaptor complex 0.04 OrthoFinder output from all 47 species
LOC_Os03g23950.1 LOC_Os03g23950 large subunit beta of AP-1 trans-Golgi network cargo... 0.02 OrthoFinder output from all 47 species
Lfl_g02298 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
Lfl_g05633 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
MA_10436050g0010 No alias Beta-adaptin-like protein C OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Msp_g00711 No alias large subunit beta of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
Msp_g04742 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
Ore_g04993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36319 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
Pir_g11812 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
Smo269184 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.03 OrthoFinder output from all 47 species
Smo269763 No alias Vesicle trafficking.endomembrane trafficking.vacuolar... 0.03 OrthoFinder output from all 47 species
Solyc08g068210.3.1 Solyc08g068210 large subunit beta of AP-4 vacuole cargo adaptor complex 0.04 OrthoFinder output from all 47 species
Solyc08g081320.3.1 Solyc08g081320 large subunit beta of AP-1 trans-Golgi network cargo... 0.05 OrthoFinder output from all 47 species
Spa_g16508 No alias large subunit beta of AP-4 vacuole cargo adaptor complex... 0.03 OrthoFinder output from all 47 species
Zm00001e001693_P001 Zm00001e001693 large subunit beta of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species
Zm00001e020411_P002 Zm00001e020411 large subunit beta of AP-4 vacuole cargo adaptor complex 0.03 OrthoFinder output from all 47 species
Zm00001e027916_P001 Zm00001e027916 large subunit beta of AP-4 vacuole cargo adaptor complex 0.04 OrthoFinder output from all 47 species
Zm00001e038184_P001 Zm00001e038184 large subunit beta of AP-1 trans-Golgi network cargo... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004659 prenyltransferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008318 protein prenyltransferase activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
BP GO:0018342 protein prenylation IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0097354 prenylation IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR015151 B-adaptin_app_sub_C 792 907
IPR008152 Clathrin_a/b/g-adaptin_app_Ig 686 781
IPR002553 Clathrin/coatomer_adapt-like_N 15 533
No external refs found!