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  5. Len_g12266

Len_g12266


Description : subunit beta2 of coat protein complex & original description: none


Gene families : OG0002111 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002111_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g12266
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00142p00013680 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.11 OrthoFinder output from all 47 species
AT1G79990 No alias structural molecules 0.13 OrthoFinder output from all 47 species
AT3G15980 No alias Coatomer, beta' subunit 0.07 OrthoFinder output from all 47 species
Ala_g02602 No alias subunit beta2 of coat protein complex & original... 0.09 OrthoFinder output from all 47 species
Als_g04780 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Als_g23306 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Als_g23307 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Aob_g06720 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Aop_g12571 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000608 No alias subunit beta2 of coat protein complex & original... 0.07 OrthoFinder output from all 47 species
Azfi_s0038.g026263 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.30G060200.1 Ceric.30G060200 subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020903.33 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.06 OrthoFinder output from all 47 species
Cre02.g118500 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 OrthoFinder output from all 47 species
Dcu_g04083 No alias subunit beta2 of coat protein complex & original... 0.07 OrthoFinder output from all 47 species
Dde_g02366 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Ehy_g02910 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Ehy_g08641 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01017121001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.09 OrthoFinder output from all 47 species
Gb_26317 No alias subunit beta2 of coat protein complex 0.06 OrthoFinder output from all 47 species
LOC_Os02g11830.2 LOC_Os02g11830 subunit beta2 of coat protein complex 0.07 OrthoFinder output from all 47 species
LOC_Os02g11840.1 LOC_Os02g11840 subunit beta2 of coat protein complex 0.06 OrthoFinder output from all 47 species
LOC_Os06g05180.3 LOC_Os06g05180 Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica... 0.07 OrthoFinder output from all 47 species
Lfl_g05710 No alias subunit beta2 of coat protein complex & original... 0.08 OrthoFinder output from all 47 species
MA_10436836g0020 No alias Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica... 0.01 OrthoFinder output from all 47 species
MA_10436968g0010 No alias peroxisomal polyamine oxidase (PAO2/3/4). subunit beta2... 0.06 OrthoFinder output from all 47 species
Mp3g04060.1 No alias subunit beta2 of coat protein complex 0.08 OrthoFinder output from all 47 species
Nbi_g07405 No alias subunit beta2 of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Ore_g10228 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Pir_g14528 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Ppi_g01343 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014985 No alias subunit beta2 of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Solyc03g120270.4.1 Solyc03g120270 subunit beta2 of coat protein complex 0.09 OrthoFinder output from all 47 species
Solyc06g066730.3.1 Solyc06g066730 subunit beta2 of coat protein complex 0.07 OrthoFinder output from all 47 species
Solyc12g043000.3.1 Solyc12g043000 subunit beta2 of coat protein complex 0.09 OrthoFinder output from all 47 species
Spa_g10496 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Spa_g17544 No alias subunit beta2 of coat protein complex & original... 0.05 OrthoFinder output from all 47 species
Spa_g50190 No alias subunit beta2 of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Tin_g02168 No alias subunit beta2 of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Zm00001e014494_P001 Zm00001e014494 subunit beta2 of coat protein complex 0.13 OrthoFinder output from all 47 species
Zm00001e024969_P001 Zm00001e024969 subunit beta2 of coat protein complex 0.11 OrthoFinder output from all 47 species
Zm00001e030001_P002 Zm00001e030001 subunit beta2 of coat protein complex 0.1 OrthoFinder output from all 47 species
Zm00001e036524_P002 Zm00001e036524 subunit beta2 of coat protein complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 401 844
IPR001680 WD40_repeat 216 253
IPR001680 WD40_repeat 141 167
IPR001680 WD40_repeat 173 209
IPR001680 WD40_repeat 302 338
IPR001680 WD40_repeat 259 297
No external refs found!