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  5. Len_g12091

Len_g12091


Description : scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex & original description: none


Gene families : OG0002046 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g12091

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00133350 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.05 OrthoFinder output from all 47 species
AT1G02080 No alias transcription regulators 0.06 OrthoFinder output from all 47 species
Ala_g12815 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.07 OrthoFinder output from all 47 species
Als_g17486 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.06 OrthoFinder output from all 47 species
Aob_g22134 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Aop_g06241 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035985 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Cba_g12926 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Ceric.34G056500.1 Ceric.34G056500 scaffold component *(NOT1) of mRNA deadenylation... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000767.19 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
Dcu_g02066 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
GSVIVT01000874001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.07 OrthoFinder output from all 47 species
GSVIVT01018178001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
GSVIVT01018721001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.06 OrthoFinder output from all 47 species
Gb_12251 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.04 OrthoFinder output from all 47 species
Lfl_g10188 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.04 OrthoFinder output from all 47 species
MA_100304g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_1121588g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_42843g0010 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.06 OrthoFinder output from all 47 species
Mp3g11860.1 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.02 OrthoFinder output from all 47 species
Ore_g16116 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Pir_g16782 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0261.g026893 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Sam_g40588 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.07 OrthoFinder output from all 47 species
Smo440060 No alias RNA processing.RNA decay.deadenylation-dependent... 0.06 OrthoFinder output from all 47 species
Solyc01g090780.3.1 Solyc01g090780 component NOT1 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species
Zm00001e000031_P001 Zm00001e000031 component NOT1 of mRNA deadenylation CCR4-NOT complex 0.06 OrthoFinder output from all 47 species
Zm00001e039114_P001 Zm00001e039114 component NOT1 of mRNA deadenylation CCR4-NOT complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP HCCA
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
CC GO:0070461 SAGA-type complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR032191 CNOT1_CAF1_bind 970 1189
IPR032194 CNOT1_HEAT 475 623
IPR007196 CCR4-Not_Not1_C 2049 2414
IPR024557 CNOT1_dom_4 1321 1462
IPR032193 CNOT1_TTP_bind 656 818
No external refs found!