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  5. Len_g11686

Len_g11686


Description : polynucleotide kinase involved in ITS2 rRNA removal *(GRC3) & original description: none


Gene families : OG0006547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006547_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g11686

Target Alias Description ECC score Gene Family Method Actions
Dac_g21136 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species
Ehy_g03858 No alias polynucleotide kinase involved in ITS2 rRNA removal... 0.04 OrthoFinder output from all 47 species
Mp1g28270.1 No alias GRC3 polynucleotide kinase involved in ITS2 rRNA removal 0.01 OrthoFinder output from all 47 species
Zm00001e016654_P001 Zm00001e016654 GRC3 polynucleotide kinase involved in ITS2 rRNA removal 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006784 heme A biosynthetic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046160 heme a metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR032319 CLP1_P 378 427
IPR032319 CLP1_P 246 351
No external refs found!