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  5. Len_g09762

Len_g09762


Description : not classified & original description: none


Gene families : OG0001992 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001992_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g09762

Target Alias Description ECC score Gene Family Method Actions
Adi_g003570 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g076988 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g109854 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g07988 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0487.g073451 No alias not classified & original description: CDS=405-3596 0.03 OrthoFinder output from all 47 species
Cba_g19310 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.21G076500.1 Ceric.21G076500 not classified & original description: pacid=50604105... 0.04 OrthoFinder output from all 47 species
Ceric.21G076600.1 Ceric.21G076600 not classified & original description: pacid=50603568... 0.06 OrthoFinder output from all 47 species
Dcu_g07047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017976001 No alias No description available 0.02 OrthoFinder output from all 47 species
Lfl_g03426 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16342 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g36487 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g076040.3.1 Solyc09g076040 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc11g066990.2.1 Solyc11g066990 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g10770 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01224 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0031047 RNA-mediated gene silencing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR005380 XS_domain 856 981
No external refs found!