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  5. Len_g09678

Len_g09678 (PUB25)


Aliases : PUB25

Description : E3 ubiquitin ligase & original description: none


Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g09678

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00199950 evm_27.TU.AmTr_v1... U-box domain-containing protein 31 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00030p00130440 CMPG2, ATCMPG2,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AMTR_s00030p00159240 PUB23,... E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00069p00038840 PUB22,... E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00138p00053700 evm_27.TU.AmTr_v1... U-box domain-containing protein 21 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G18710 PUB29, ATPUB29 plant U-box 29 0.03 OrthoFinder output from all 47 species
AT5G64660 CMPG2, ATCMPG2 CYS, MET, PRO, and GLY protein 2 0.04 OrthoFinder output from all 47 species
Adi_g003285 PUB25 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g02974 PUB23 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20026 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g23185 CMPG1, ATCMPG1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23643 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30969 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.06 OrthoFinder output from all 47 species
Als_g60936 PUB25 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61569 PUB26 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene18467.t1 PUB23, Aspi01Gene18467 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene19337.t1 PUB26, Aspi01Gene19337 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene19351.t1 Aspi01Gene19351 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44311.t1 PUB22, Aspi01Gene44311 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene51624.t1 PUB15, Aspi01Gene51624 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.24G024900.1 PUB8, B80,... E3 ubiquitin ligase *(PUB8) & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g07421 PUB23 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g46168 PUB23 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g01464 PUB26 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g16036 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01026542001 CMPG2, ATCMPG2 U-box domain-containing protein 27 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01026764001 PUB22 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_02627 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_13090 PUB25 U-box domain-containing protein 25 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_16228 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_19502 PUB23 U-box domain-containing protein 25 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_27794 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os01g64570.1 PUB23, LOC_Os01g64570 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os02g34410.1 PUB25, LOC_Os02g34410 U-box domain-containing protein 25 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os04g49970.1 PUB23, LOC_Os04g49970 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os06g13870.1 LOC_Os06g13870 U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os12g06410.1 PUB24, LOC_Os12g06410 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Lfl_g24284 PUB25 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430196g0010 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_10432179g0010 PUB22 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10432981g0010 PUB22 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_126399g0010 PUB26 U-box domain-containing protein 25 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_415393g0010 PUB25 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_48004g0010 No alias E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_5536318g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_58844g0020 PUB22 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_684442g0010 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_9494855g0010 PUB26 U-box domain-containing protein 25 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp3g22740.1 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp3g22750.1 PUB26 U-box domain-containing protein 26 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp7g11000.1 PUB25 U-box domain-containing protein 25 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g11599 PUB23 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08919 PUB25 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44415 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g34239 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04485 PUB26 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0110.g020660 No alias not classified & original description: CDS=1-1503 0.03 OrthoFinder output from all 47 species
Smo416356 PUB26 U-box domain-containing protein 30 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Smo426053 PUB26 U-box domain-containing protein 26 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc01g009320.2.1 PUB23, Solyc01g009320 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc04g008100.3.1 Solyc04g008100 U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc06g074140.1.1 PUB24, Solyc06g074140 E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g47017 PUB23 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15093 PUB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007109_P001 PUB23, Zm00001e007109 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e015763_P001 Zm00001e015763 U-box domain-containing protein 21 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e039417_P001 PUB23, Zm00001e039417 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e041397_P001 PUB23, Zm00001e041397 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004664 prephenate dehydratase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006558 L-phenylalanine metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009094 L-phenylalanine biosynthetic process IEP HCCA
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP HCCA
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 17 86
No external refs found!