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  5. Len_g09132

Len_g09132 (54CP, SRP54CP, CPSRP54, FFC)


Aliases : 54CP, SRP54CP, CPSRP54, FFC

Description : component *(cpSRP54) of thylakoid membrane SRP insertion system & original description: none


Gene families : OG0005930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005930_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g09132
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00031p00204460 54CP, SRP54CP,... Protein translocation.chloroplast.thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
Als_g13104 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
Azfi_s0352.g066605 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.05 OrthoFinder output from all 47 species
Ceric.03G060800.1 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
Cre11.g479750 54CP, SRP54CP,... Protein translocation.chloroplast.thylakoid membrane SRP... 0.05 OrthoFinder output from all 47 species
Dac_g21514 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.04 OrthoFinder output from all 47 species
Dcu_g11802 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.03 OrthoFinder output from all 47 species
Ehy_g19073 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.03 OrthoFinder output from all 47 species
GSVIVT01033862001 54CP, SRP54CP,... Protein translocation.chloroplast.thylakoid membrane SRP... 0.04 OrthoFinder output from all 47 species
LOC_Os11g05552.1 54CP, SRP54CP,... Signal recognition particle 54 kDa protein,... 0.09 OrthoFinder output from all 47 species
MA_10274946g0010 54CP, SRP54CP,... Signal recognition particle 54 kDa protein,... 0.06 OrthoFinder output from all 47 species
Mp1g05670.1 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.02 OrthoFinder output from all 47 species
Nbi_g12082 54CP, SRP54CP,... component *(cpSRP54) of thylakoid membrane SRP insertion... 0.03 OrthoFinder output from all 47 species
Solyc09g009940.3.1 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.03 OrthoFinder output from all 47 species
Zm00001e024147_P003 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.06 OrthoFinder output from all 47 species
Zm00001e039381_P004 54CP, SRP54CP,... component cpSRP54 of thylakoid membrane SRP insertion system 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR000897 SRP54_GTPase_dom 219 414
IPR004125 Signal_recog_particle_SRP54_M 445 544
IPR013822 Signal_recog_particl_SRP54_hlx 124 201
No external refs found!