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  5. Len_g08741

Len_g08741


Description : not classified & original description: none


Gene families : OG0000946 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000946_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g08741

Target Alias Description ECC score Gene Family Method Actions
Adi_g041606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g059929 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g03303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38915 No alias component *(MED19) of head module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Dcu_g49297 CRR21 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g29356 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23341 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003972 RNA ligase (ATP) activity IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008452 RNA ligase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 156 202
IPR002885 Pentatricopeptide_repeat 130 153
No external refs found!