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  5. Len_g08427

Len_g08427


Description : component *(uS5) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001457 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001457_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g08427

Target Alias Description ECC score Gene Family Method Actions
AT2G41840 No alias Ribosomal protein S5 family protein 0.02 OrthoFinder output from all 47 species
Adi_g040222 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aob_g07053 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.135 XW6 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Cre01.g039250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 47 species
GSVIVT01033299001 No alias 40S ribosomal protein S2-4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Lfl_g25707 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Mp5g05010.1 No alias component RPS2 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp5g15970.1 No alias component RPS2 of SSU proteome 0.02 OrthoFinder output from all 47 species
Nbi_g03400 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ore_g03081 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pp3c20_18740V3.1 Pp3c20_18740 Ribosomal protein S5 family protein 0.02 OrthoFinder output from all 47 species
Pp3c24_5780V3.1 Pp3c24_5780 Ribosomal protein S5 family protein 0.02 OrthoFinder output from all 47 species
Solyc04g063290.3.1 Solyc04g063290 component RPS2 of SSU proteome 0.02 OrthoFinder output from all 47 species
Solyc04g074300.3.1 Solyc04g074300 component RPS2 of SSU proteome 0.03 OrthoFinder output from all 47 species
Spa_g13171 No alias component *(uS5) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e006090_P001 Zm00001e006090 component RPS2 of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e011816_P001 Zm00001e011816 component RPS2 of SSU proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005324 Ribosomal_S5_C 165 237
IPR013810 Ribosomal_S5_N 81 145
No external refs found!