Aliases : VCS
Description : scaffold component *(VCS) of mRNA decapping complex & original description: none
Gene families : OG0001030 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001030_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00061p00131900 | VCS,... | RNA processing.RNA decay.deadenylation-dependent... | 0.04 | OrthoFinder output from all 47 species | |
AT3G13300 | VCS | Transducin/WD40 repeat-like superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
Adi_g055830 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
Aev_g04893 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.06 | OrthoFinder output from all 47 species | |
Als_g63425 | VCR | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene19508.t1 | VCS, Aspi01Gene19508 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001038.27 | VCS | Varicose-related protein OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
Dcu_g11716 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01014783001 | VCS | RNA processing.RNA decay.deadenylation-dependent... | 0.04 | OrthoFinder output from all 47 species | |
Gb_04906 | VCS | scaffold component VCS of mRNA decapping complex | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os06g19660.1 | VCS, LOC_Os06g19660 | scaffold component VCS of mRNA decapping complex | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g18274 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
MA_10431534g0020 | VCS | Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
Mp3g11710.1 | VCS | scaffold component VCS of mRNA decapping complex | 0.02 | OrthoFinder output from all 47 species | |
Msp_g14526 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.06 | OrthoFinder output from all 47 species | |
Ore_g09332 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g36602 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g03283 | VCS | scaffold component *(VCS) of mRNA decaPping complex &... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g10110 | VCS | scaffold component *(VCS) of mRNA decaPping complex &... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g16345 | No alias | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g17551 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g08563 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e015689_P001 | VCS, Zm00001e015689 | scaffold component VCS of mRNA decapping complex | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
BP | GO:0040008 | regulation of growth | IEP | HCCA |
BP | GO:0045927 | positive regulation of growth | IEP | HCCA |
BP | GO:0048518 | positive regulation of biological process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032401 | EDC4_WD40 | 234 | 544 |
No external refs found! |