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  5. Len_g08129

Len_g08129 (emb2746)


Aliases : emb2746

Description : exoribonuclease *(RNase J) & original description: none


Gene families : OG0003970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003970_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g08129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00241540 emb2746,... RNA processing.organelle machineries.ribonuclease... 0.06 OrthoFinder output from all 47 species
AT5G63420 emb2746 RNA-metabolising metallo-beta-lactamase family protein 0.04 OrthoFinder output from all 47 species
Als_g22857 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10429859g0010 emb2746 exo-/endoribonuclease (RNase J) 0.03 OrthoFinder output from all 47 species
MA_10430099g0010 emb2746 no description available(sp|q84w56|rnj_arath : 150.0) 0.02 OrthoFinder output from all 47 species
Mp3g10830.1 emb2746 exo-/endoribonuclease (RNase J) 0.02 OrthoFinder output from all 47 species
Msp_g21056 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g25599 emb2746 exoribonuclease *(RNase J) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04183 emb2746 exoribonuclease *(RNase J) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22135 emb2746 exoribonuclease *(RNase J) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e013900_P001 emb2746, Zm00001e013900 exo-/endoribonuclease (RNase J) 0.03 OrthoFinder output from all 47 species
Zm00001e025070_P003 emb2746, Zm00001e025070 exo-/endoribonuclease (RNase J) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR011108 RMMBL 456 512
IPR001279 Metallo-B-lactamas 131 268
IPR044822 Myb_DNA-bind_4 836 917
No external refs found!