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  5. Len_g07468

Len_g07468


Description : EC_3.2 glycosylase & original description: none


Gene families : OG0000312 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000312_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g07468

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00118570 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 OrthoFinder output from all 47 species
AT1G19170 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G42950 No alias Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G41870 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g000683 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32626 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g43887 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07714 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20386 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11539 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20477 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene69423.t1 Aspi01Gene69423 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037869 No alias EC_3.2 glycosylase & original description: CDS=133-1653 0.02 OrthoFinder output from all 47 species
Cba_g13382 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22323 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10127 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019516001 No alias Probable polygalacturonase OS=Vitis vinifera 0.05 OrthoFinder output from all 47 species
GSVIVT01026985001 No alias Probable polygalacturonase OS=Vitis vinifera 0.03 OrthoFinder output from all 47 species
GSVIVT01028860001 No alias Probable polygalacturonase OS=Vitis vinifera 0.05 OrthoFinder output from all 47 species
LOC_Os01g43160.1 LOC_Os01g43160 Probable polygalacturonase OS=Vitis vinifera... 0.03 OrthoFinder output from all 47 species
LOC_Os02g15690.1 LOC_Os02g15690 Probable polygalacturonase OS=Vitis vinifera... 0.04 OrthoFinder output from all 47 species
LOC_Os05g50960.1 LOC_Os05g50960 Probable polygalacturonase OS=Vitis vinifera... 0.04 OrthoFinder output from all 47 species
LOC_Os12g36810.1 LOC_Os12g36810 Probable polygalacturonase OS=Vitis vinifera... 0.03 OrthoFinder output from all 47 species
Lfl_g38310 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
MA_12554g0020 No alias Probable polygalacturonase OS=Vitis vinifera... 0.04 OrthoFinder output from all 47 species
Nbi_g06175 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g03906 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g18430 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43420 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0125.g021678 No alias EC_3.2 glycosylase & original description: CDS=1-1605 0.02 OrthoFinder output from all 47 species
Solyc07g042160.3.1 Solyc07g042160 Probable polygalacturonase OS=Vitis vinifera... 0.03 OrthoFinder output from all 47 species
Solyc08g081480.3.1 Solyc08g081480 Probable polygalacturonase OS=Vitis vinifera... 0.02 OrthoFinder output from all 47 species
Spa_g51753 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11741 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e021051_P001 Zm00001e021051 Probable polygalacturonase OS=Vitis vinifera... 0.03 OrthoFinder output from all 47 species
Zm00001e027889_P004 Zm00001e027889 Probable polygalacturonase OS=Vitis vinifera... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0015098 molybdate ion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015689 molybdate ion transport IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 159 439
No external refs found!