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  5. Len_g05443

Len_g05443


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g05443

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00242080 CRR28,... Pentatricopeptide repeat-containing protein At1g59720,... 0.02 OrthoFinder output from all 47 species
AMTR_s00030p00109240 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Adi_g004476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42051 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19430 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24374 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36539 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18037 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26681 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32098 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g46291 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54955 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22823 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37586 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37921 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04156 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12947 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16819 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g27203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000793 No alias not classified & original description: CDS=1-2415 0.02 OrthoFinder output from all 47 species
Azfi_s0069.g036581 No alias not classified & original description: CDS=1-1653 0.02 OrthoFinder output from all 47 species
Azfi_s0117.g046573 No alias not classified & original description: CDS=1-1419 0.02 OrthoFinder output from all 47 species
Azfi_s0221.g058730 No alias not classified & original description: CDS=1-747 0.02 OrthoFinder output from all 47 species
Azfi_s0349.g066523 EMB2758 not classified & original description: CDS=141-2294 0.02 OrthoFinder output from all 47 species
Cba_g19911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20185 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20235 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29578 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g44509 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G002600.1 EMB2758, Ceric.02G002600 not classified & original description: pacid=50585462... 0.03 OrthoFinder output from all 47 species
Ceric.03G039400.1 Ceric.03G039400 not classified & original description: pacid=50571919... 0.02 OrthoFinder output from all 47 species
Ceric.14G059500.1 PTAC9, OSB2,... ssDNA-binding protein *(OSB) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.28G001700.1 Ceric.28G001700 not classified & original description: pacid=50570577... 0.02 OrthoFinder output from all 47 species
Ceric.29G060200.1 Ceric.29G060200 not classified & original description: pacid=50624987... 0.02 OrthoFinder output from all 47 species
Ceric.34G063100.1 Ceric.34G063100 not classified & original description: pacid=50623551... 0.02 OrthoFinder output from all 47 species
Ceric.38G035700.1 Ceric.38G035700 not classified & original description: pacid=50579678... 0.02 OrthoFinder output from all 47 species
Ceric.39G022100.1 Ceric.39G022100 not classified & original description: pacid=50582510... 0.02 OrthoFinder output from all 47 species
Dac_g02910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g28131 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30157 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42553 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42645 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g42750 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g44353 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g45717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g37168 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38682 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g42644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g43238 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46646 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g05942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25985 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28884 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008656001 No alias Pentatricopeptide repeat-containing protein At5g50990... 0.02 OrthoFinder output from all 47 species
Gb_10113 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 OrthoFinder output from all 47 species
Gb_20571 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
LOC_Os05g49920.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.02 OrthoFinder output from all 47 species
LOC_Os09g07780.1 OTP84, LOC_Os09g07780 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
Lfl_g05976 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07754 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10721g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_122606g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Msp_g23170 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26428 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g47992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24038 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g24055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18691 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g37890 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12598 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14457 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g15819 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20094 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57343 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57931 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g65865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04531 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03156 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27765 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g007850.2.1 Solyc01g007850 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Solyc05g013200.1.1 OTP85, Solyc05g013200 RNA editing factor (OTP85) 0.03 OrthoFinder output from all 47 species
Solyc11g065250.1.1 EMB2744, Solyc11g065250 Pentatricopeptide repeat-containing protein At5g39680... 0.03 OrthoFinder output from all 47 species
Spa_g14314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g33660 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08462 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g16987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26892 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g31547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35636 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45955 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e034478_P001 Zm00001e034478 Pentatricopeptide repeat-containing protein At3g24000,... 0.02 OrthoFinder output from all 47 species
Zm00001e039394_P003 Zm00001e039394 Pentatricopeptide repeat-containing protein At5g04780,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 590 611
IPR002885 Pentatricopeptide_repeat 182 204
IPR002885 Pentatricopeptide_repeat 385 407
IPR002885 Pentatricopeptide_repeat 513 559
IPR002885 Pentatricopeptide_repeat 108 154
IPR002885 Pentatricopeptide_repeat 413 457
IPR002885 Pentatricopeptide_repeat 308 355
IPR002885 Pentatricopeptide_repeat 208 254
No external refs found!