Len_g05067

Description : component *(uS13c) of small plastid ribosomal-subunit proteome & original description: none

Gene families : OG0004147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004147_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g05067
Cluster	HCCA: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00089340	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
AT5G14320	No alias	Ribosomal protein S13/S18 family	0.09	OrthoFinder output from all 47 species
Adi_g042167	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aev_g04341	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ala_g00666	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Aob_g00300	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aop_g40481	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Azfi_s0065.g035921	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Ceric.05G059300.1	Ceric.05G059300	component *(uS13c) of small plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Cre12.g493950	No alias	Protein biosynthesis.organelle translation...	0.09	OrthoFinder output from all 47 species
Dac_g26723	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dcu_g44492	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ehy_g00682	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
GSVIVT01008933001	No alias	Protein biosynthesis.organelle translation...	0.08	OrthoFinder output from all 47 species
Gb_24491	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.05	OrthoFinder output from all 47 species
LOC_Os03g49710.1	LOC_Os03g49710	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.07	OrthoFinder output from all 47 species
Len_g07705	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Lfl_g00631	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
MA_10431241g0010	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.04	OrthoFinder output from all 47 species
Mp1g18230.1	No alias	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.12	OrthoFinder output from all 47 species
Msp_g02627	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Nbi_g15772	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ore_g09656	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pir_g35705	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pnu_g13107	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014746	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Solyc05g005880.2.1	Solyc05g005880	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.08	OrthoFinder output from all 47 species
Spa_g00577	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Tin_g04300	No alias	component *(uS13c) of small plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Zm00001e005396_P004	Zm00001e005396	component mtRPS13\|psRPS13 of small ribosomal subunit...	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	HCCA
MF	GO:0008942	nitrite reductase [NAD(P)H] activity	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034311	diol metabolic process	IEP	HCCA
BP	GO:0034312	diol biosynthetic process	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
MF	GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:0098809	nitrite reductase activity	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	40	148

External Links

No external refs found!

Len_g05067

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation