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  5. Len_g04844

Len_g04844 (SNL4)


Aliases : SNL4

Description : component *(SNL) of histone deacetylase machineries & original description: none


Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g04844

Target Alias Description ECC score Gene Family Method Actions
AT1G10450 SNL6 SIN3-like 6 0.03 OrthoFinder output from all 47 species
AT1G24190 SNL3, ATSIN3, SIN3 SIN3-like 3 0.03 OrthoFinder output from all 47 species
AT3G01320 SNL1 SIN3-like 1 0.05 OrthoFinder output from all 47 species
AT5G15020 SNL2 SIN3-like 2 0.06 OrthoFinder output from all 47 species
Adi_g066433 SNL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088432 SNL3, ATSIN3, SIN3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117146 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ala_g17667 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ala_g21578 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Aob_g27014 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Aob_g29157 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Aop_g00817 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene27809.t1 SNL4, Aspi01Gene27809 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene46934.t1 SNL3, ATSIN3,... component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011658 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Azfi_s0048.g030537 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Cba_g77516 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ceric.31G072300.1 SNL4, Ceric.31G072300 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001155.28 SNL3, ATSIN3, SIN3 Paired amphipathic helix protein Sin3-like 1... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021234.23 SNL5 Paired amphipathic helix protein Sin3-like 3... 0.02 OrthoFinder output from all 47 species
Cre03.g180800 SNL4 Paired amphipathic helix protein Sin3-like 4... 0.03 OrthoFinder output from all 47 species
Dcu_g18942 SNL4 component *(SNL) of histone deacetylase machineries &... 0.09 OrthoFinder output from all 47 species
Ehy_g10035 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
GSVIVT01032579001 SNL2 Chromatin organisation.histone modifications.histone... 0.05 OrthoFinder output from all 47 species
Gb_35988 SNL4 component SNL of histone deacetylase machineries 0.05 OrthoFinder output from all 47 species
LOC_Os01g01960.1 SNL3, ATSIN3,... component SNL of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
LOC_Os05g01020.2 SNL4, LOC_Os05g01020 component SNL of histone deacetylase machineries 0.08 OrthoFinder output from all 47 species
Lfl_g03500 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Lfl_g03517 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.08 OrthoFinder output from all 47 species
MA_18241g0010 SNL4 component SNL of histone deacetylase machineries 0.08 OrthoFinder output from all 47 species
Mp5g20010.1 SNL4 Paired amphipathic helix protein Sin3-like 4... 0.01 OrthoFinder output from all 47 species
Msp_g06593 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Msp_g24890 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Nbi_g03860 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Ore_g30140 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Pir_g13056 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Pnu_g27695 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.01 OrthoFinder output from all 47 species
Ppi_g09115 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0277.g027077 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Sam_g14557 No alias component *(SNL) of histone deacetylase machineries &... 0.1 OrthoFinder output from all 47 species
Sam_g25571 No alias component *(SNL) of histone deacetylase machineries &... 0.07 OrthoFinder output from all 47 species
Smo440352 SNL4 Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
Solyc02g067570.3.1 SNL2, Solyc02g067570 component SNL of histone deacetylase machineries 0.07 OrthoFinder output from all 47 species
Solyc02g087360.4.1 SNL2, Solyc02g087360 component SNL of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
Spa_g15712 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Spa_g18268 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Tin_g13041 SNL4 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Zm00001e017111_P002 SNL4, Zm00001e017111 component SNL of histone deacetylase machineries 0.07 OrthoFinder output from all 47 species
Zm00001e025644_P001 SNL4, Zm00001e025644 component SNL of histone deacetylase machineries 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003822 PAH 52 96
IPR003822 PAH 351 393
IPR003822 PAH 136 180
IPR031693 Sin3_C 1087 1329
IPR013194 HDAC_interact_dom 497 589
No external refs found!